Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.51■□□□□ 0.23
SRP54P61011 PMS2P4-201ENST00000412466 1052 ntBASIC16.51■□□□□ 0.23
SRP54P61011 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.51■□□□□ 0.23
SRP54P61011 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.51■□□□□ 0.23
SRP54P61011 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.51■□□□□ 0.23
SRP54P61011 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.51■□□□□ 0.23
SRP54P61011 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.51■□□□□ 0.23
SRP54P61011 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.51■□□□□ 0.23
SRP54P61011 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SRP54P61011 CYP2A7P1-201ENST00000595391 815 ntBASIC16.51■□□□□ 0.23
SRP54P61011 AC106028.4-201ENST00000614509 607 ntBASIC16.51■□□□□ 0.23
SRP54P61011 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 AL513477.1-201ENST00000602865 2407 ntBASIC16.51■□□□□ 0.23
SRP54P61011 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SRP54P61011 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SRP54P61011 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
SRP54P61011 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SRP54P61011 PP12613-201ENST00000424958 2230 ntBASIC16.5■□□□□ 0.23
SRP54P61011 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.5■□□□□ 0.23
SRP54P61011 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.5■□□□□ 0.23
SRP54P61011 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.5■□□□□ 0.23
SRP54P61011 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
SRP54P61011 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.5■□□□□ 0.23
SRP54P61011 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.5■□□□□ 0.23
SRP54P61011 AC025678.2-201ENST00000562061 970 ntBASIC16.5■□□□□ 0.23
SRP54P61011 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.5■□□□□ 0.23
SRP54P61011 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.5■□□□□ 0.23
SRP54P61011 MIR3909-201ENST00000579518 119 ntBASIC16.5■□□□□ 0.23
SRP54P61011 MIR4492-201ENST00000581627 80 ntBASIC16.5■□□□□ 0.23
SRP54P61011 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.5■□□□□ 0.23
SRP54P61011 AC009093.7-201ENST00000623853 1223 ntBASIC16.5■□□□□ 0.23
SRP54P61011 LINC00628-201ENST00000628516 1289 ntBASIC16.5■□□□□ 0.23
SRP54P61011 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 AC092053.1-201ENST00000605787 1936 ntBASIC16.5■□□□□ 0.23
SRP54P61011 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
SRP54P61011 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 AC124067.4-201ENST00000519691 2379 ntBASIC16.5■□□□□ 0.23
SRP54P61011 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.5■□□□□ 0.23
SRP54P61011 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SRP54P61011 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.5■□□□□ 0.23
SRP54P61011 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SRP54P61011 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.49■□□□□ 0.23
SRP54P61011 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SRP54P61011 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.49■□□□□ 0.23
SRP54P61011 TUBB8P12-201ENST00000308911 1335 ntBASIC16.49■□□□□ 0.23
SRP54P61011 TUBB7P-202ENST00000428444 1305 ntBASIC16.49■□□□□ 0.23
SRP54P61011 TUBB8P7-204ENST00000567960 1332 ntBASIC16.49■□□□□ 0.23
SRP54P61011 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.49■□□□□ 0.23
SRP54P61011 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 WASH6P-202ENST00000359512 1437 ntBASIC16.49■□□□□ 0.23
SRP54P61011 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SRP54P61011 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SRP54P61011 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SRP54P61011 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.49■□□□□ 0.23
SRP54P61011 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms