Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Gm5479-201ENSMUST00000160578 435 ntBASIC13.19□□□□□ -0.3
Sox3P53784 Mir3547-201ENSMUST00000175461 88 ntBASIC13.19□□□□□ -0.3
Sox3P53784 AC155252.1-201ENSMUST00000226462 1208 ntBASIC13.19□□□□□ -0.3
Sox3P53784 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sox3P53784 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Sox3P53784 Olfr582-201ENSMUST00000098212 960 ntBASIC13.19□□□□□ -0.3
Sox3P53784 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sox3P53784 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.19□□□□□ -0.3
Sox3P53784 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sox3P53784 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sox3P53784 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Sox3P53784 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Sox3P53784 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sox3P53784 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sox3P53784 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC13.18□□□□□ -0.3
Sox3P53784 Gm6222-201ENSMUST00000120787 396 ntBASIC13.18□□□□□ -0.3
Sox3P53784 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.18□□□□□ -0.3
Sox3P53784 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sox3P53784 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 AC156016.3-201ENSMUST00000228623 344 ntBASIC13.18□□□□□ -0.3
Sox3P53784 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sox3P53784 Gm5356-201ENSMUST00000093326 615 ntBASIC13.18□□□□□ -0.3
Sox3P53784 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
Sox3P53784 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.18□□□□□ -0.3
Sox3P53784 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.18□□□□□ -0.3
Sox3P53784 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sox3P53784 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC13.17□□□□□ -0.3
Sox3P53784 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC13.17□□□□□ -0.3
Sox3P53784 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.17□□□□□ -0.3
Sox3P53784 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC13.17□□□□□ -0.3
Sox3P53784 Gm45784-201ENSMUST00000188360 142 ntBASIC13.17□□□□□ -0.3
Sox3P53784 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Gm4959-201ENSMUST00000197271 1044 ntBASIC13.17□□□□□ -0.3
Sox3P53784 Gm43179-201ENSMUST00000198797 275 ntBASIC13.17□□□□□ -0.3
Sox3P53784 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC13.17□□□□□ -0.3
Sox3P53784 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sox3P53784 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Sox3P53784 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms