Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm21038-201ENSMUST00000222205 1383 ntBASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm20632-201ENSMUST00000176760 2427 ntBASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm13689-201ENSMUST00000119360 685 ntBASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm12485-201ENSMUST00000119641 291 ntBASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trim47Q8C0E3 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Gm11918-201ENSMUST00000121660 179 ntBASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trim47Q8C0E3 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gm28911-201ENSMUST00000188837 117 ntBASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 AC131997.1-201ENSMUST00000228611 1229 ntBASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trim47Q8C0E3 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trim47Q8C0E3 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms