Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Gm11405-201ENSMUST00000118689 1556 ntBASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Ushbp1Q8R370 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm5639-201ENSMUST00000122305 2403 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm22189-201ENSMUST00000103822 86 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm3809-201ENSMUST00000180973 1006 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm9522-201ENSMUST00000182394 926 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Gm29741-201ENSMUST00000192667 421 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 AC114543.1-201ENSMUST00000226451 1558 ntBASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Ushbp1Q8R370 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gm15653-201ENSMUST00000119247 907 ntBASIC15.46■□□□□ 0.07
Ushbp1Q8R370 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gm3436-201ENSMUST00000179930 840 ntBASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.46■□□□□ 0.07
Ushbp1Q8R370 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Ushbp1Q8R370 AC159196.2-201ENSMUST00000224082 1622 ntBASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Ushbp1Q8R370 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Ushbp1Q8R370 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms