Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.25□□□□□ -0.13
USF1P22415 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 TIMM8BP1-201ENST00000452384 211 ntBASIC14.25□□□□□ -0.13
USF1P22415 AC087163.2-201ENST00000457299 853 ntBASIC14.25□□□□□ -0.13
USF1P22415 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.25□□□□□ -0.13
USF1P22415 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
USF1P22415 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.25□□□□□ -0.13
USF1P22415 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.25□□□□□ -0.13
USF1P22415 AL139327.4-201ENST00000612362 153 ntBASIC14.25□□□□□ -0.13
USF1P22415 AC093512.1-201ENST00000617969 520 ntBASIC14.25□□□□□ -0.13
USF1P22415 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 AL645728.2-201ENST00000641974 660 ntBASIC14.25□□□□□ -0.13
USF1P22415 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.25□□□□□ -0.13
USF1P22415 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
USF1P22415 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.24□□□□□ -0.13
USF1P22415 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.24□□□□□ -0.13
USF1P22415 FAM86GP-201ENST00000448322 971 ntBASIC14.24□□□□□ -0.13
USF1P22415 SLC25A6P2-201ENST00000497974 877 ntBASIC14.24□□□□□ -0.13
USF1P22415 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.24□□□□□ -0.13
USF1P22415 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.24□□□□□ -0.13
USF1P22415 LINC00628-201ENST00000628516 1289 ntBASIC14.24□□□□□ -0.13
USF1P22415 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.24□□□□□ -0.13
USF1P22415 PP12613-201ENST00000424958 2230 ntBASIC14.24□□□□□ -0.13
USF1P22415 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USF1P22415 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
USF1P22415 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
USF1P22415 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
USF1P22415 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
USF1P22415 AC084018.2-201ENST00000613093 2607 ntBASIC14.24□□□□□ -0.13
USF1P22415 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.24□□□□□ -0.13
USF1P22415 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
USF1P22415 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
USF1P22415 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
USF1P22415 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.23□□□□□ -0.13
USF1P22415 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms