Protein–RNA interactions for Protein: Q9CQE1

Nipsnap3b, Protein NipSnap homolog 3B, mousemouse

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nipsnap3bQ9CQE1 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Nipsnap3bQ9CQE1 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 AA619741-201ENSMUST00000195095 646 ntBASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm18049-201ENSMUST00000208909 581 ntBASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm45453-201ENSMUST00000211758 853 ntBASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Mir125a-201ENSMUST00000083545 68 ntBASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Nipsnap3bQ9CQE1 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm14752-201ENSMUST00000120719 2075 ntBASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm44065-201ENSMUST00000203184 3527 ntBASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm27631-201ENSMUST00000184163 466 ntBASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Nipsnap3bQ9CQE1 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Mir1895-201ENSMUST00000122615 79 ntBASIC13.61□□□□□ -0.23
Nipsnap3bQ9CQE1 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 80.8 ms