Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.09■□□□□ 0.33
USP39Q53GS9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USP39Q53GS9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USP39Q53GS9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.09■□□□□ 0.33
USP39Q53GS9 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.09■□□□□ 0.33
USP39Q53GS9 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.09■□□□□ 0.33
USP39Q53GS9 IGHV3-62-201ENST00000520057 340 ntBASIC17.09■□□□□ 0.33
USP39Q53GS9 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.09■□□□□ 0.33
USP39Q53GS9 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AL135744.1-201ENST00000565098 629 ntBASIC17.09■□□□□ 0.33
USP39Q53GS9 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.09■□□□□ 0.33
USP39Q53GS9 MIR4515-201ENST00000584082 81 ntBASIC17.09■□□□□ 0.33
USP39Q53GS9 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.09■□□□□ 0.33
USP39Q53GS9 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.09■□□□□ 0.33
USP39Q53GS9 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.09■□□□□ 0.33
USP39Q53GS9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.09■□□□□ 0.33
USP39Q53GS9 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.09■□□□□ 0.33
USP39Q53GS9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 AC012313.1-201ENST00000593393 3059 ntBASIC17.09■□□□□ 0.33
USP39Q53GS9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP39Q53GS9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP39Q53GS9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
USP39Q53GS9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.33
USP39Q53GS9 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP39Q53GS9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP39Q53GS9 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.08■□□□□ 0.33
USP39Q53GS9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.08■□□□□ 0.32
USP39Q53GS9 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.08■□□□□ 0.32
USP39Q53GS9 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.08■□□□□ 0.32
USP39Q53GS9 KLF2P3-201ENST00000451977 1087 ntBASIC17.08■□□□□ 0.32
USP39Q53GS9 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.08■□□□□ 0.32
USP39Q53GS9 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.08■□□□□ 0.32
USP39Q53GS9 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.08■□□□□ 0.32
USP39Q53GS9 AC243562.1-201ENST00000560672 389 ntBASIC17.08■□□□□ 0.32
USP39Q53GS9 AC051619.7-201ENST00000568314 623 ntBASIC17.08■□□□□ 0.32
USP39Q53GS9 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.08■□□□□ 0.32
USP39Q53GS9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.08■□□□□ 0.32
USP39Q53GS9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
USP39Q53GS9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.08■□□□□ 0.32
USP39Q53GS9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP39Q53GS9 REXO1L11P-201ENST00000620964 1927 ntBASIC17.08■□□□□ 0.32
USP39Q53GS9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.07■□□□□ 0.32
USP39Q53GS9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.07■□□□□ 0.32
USP39Q53GS9 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 AC063926.2-201ENST00000623766 1308 ntBASIC17.07■□□□□ 0.32
USP39Q53GS9 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 TERF1P3-201ENST00000505638 1227 ntBASIC17.07■□□□□ 0.32
USP39Q53GS9 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.07■□□□□ 0.32
USP39Q53GS9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.07■□□□□ 0.32
USP39Q53GS9 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.07■□□□□ 0.32
USP39Q53GS9 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.07■□□□□ 0.32
USP39Q53GS9 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 AL139327.4-201ENST00000612362 153 ntBASIC17.07■□□□□ 0.32
USP39Q53GS9 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 AF228730.6-201ENST00000641497 218 ntBASIC17.07■□□□□ 0.32
USP39Q53GS9 AC084121.3-201ENST00000641716 218 ntBASIC17.07■□□□□ 0.32
USP39Q53GS9 AC105233.6-201ENST00000642093 218 ntBASIC17.07■□□□□ 0.32
USP39Q53GS9 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
USP39Q53GS9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP39Q53GS9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.07■□□□□ 0.32
USP39Q53GS9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms