Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.82■□□□□ 0.6
MSH4O15457 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.82■□□□□ 0.6
MSH4O15457 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 TFAMP1-201ENST00000412727 736 ntBASIC18.82■□□□□ 0.6
MSH4O15457 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH4O15457 DNAJB3-202ENST00000449667 1266 ntBASIC18.82■□□□□ 0.6
MSH4O15457 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 KRT8P48-201ENST00000515599 1220 ntBASIC18.82■□□□□ 0.6
MSH4O15457 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.82■□□□□ 0.6
MSH4O15457 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.82■□□□□ 0.6
MSH4O15457 RARRES2P8-201ENST00000566335 367 ntBASIC18.82■□□□□ 0.6
MSH4O15457 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.82■□□□□ 0.6
MSH4O15457 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH4O15457 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
MSH4O15457 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH4O15457 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
MSH4O15457 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 PCDHA12-202ENST00000613593 2588 ntBASIC18.82■□□□□ 0.6
MSH4O15457 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
MSH4O15457 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.81■□□□□ 0.6
MSH4O15457 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
MSH4O15457 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.81■□□□□ 0.6
MSH4O15457 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
MSH4O15457 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH4O15457 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.81■□□□□ 0.6
MSH4O15457 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
MSH4O15457 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH4O15457 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
MSH4O15457 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MSH4O15457 AL135744.1-201ENST00000565098 629 ntBASIC18.81■□□□□ 0.6
MSH4O15457 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH4O15457 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.81■□□□□ 0.6
MSH4O15457 AP001160.2-201ENST00000596071 487 ntBASIC18.81■□□□□ 0.6
MSH4O15457 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH4O15457 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH4O15457 AC026120.1-201ENST00000611536 926 ntBASIC18.81■□□□□ 0.6
MSH4O15457 AC016027.1-202ENST00000607927 1699 ntBASIC18.81■□□□□ 0.6
MSH4O15457 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 WASH6P-202ENST00000359512 1437 ntBASIC18.81■□□□□ 0.6
MSH4O15457 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.81■□□□□ 0.6
MSH4O15457 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH4O15457 AC006538.1-201ENST00000567905 1585 ntBASIC18.81■□□□□ 0.6
MSH4O15457 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH4O15457 AC243562.1-201ENST00000560672 389 ntBASIC18.8■□□□□ 0.6
MSH4O15457 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.8■□□□□ 0.6
MSH4O15457 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.8■□□□□ 0.6
MSH4O15457 AC022145.2-201ENST00000598203 171 ntBASIC18.8■□□□□ 0.6
MSH4O15457 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.8■□□□□ 0.6
MSH4O15457 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 AL596442.2-201ENST00000610240 980 ntBASIC18.8■□□□□ 0.6
MSH4O15457 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH4O15457 AL513210.1-201ENST00000629608 234 ntBASIC18.8■□□□□ 0.6
MSH4O15457 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH4O15457 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH4O15457 AGGF1P2-201ENST00000426656 2106 ntBASIC18.8■□□□□ 0.6
MSH4O15457 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.8■□□□□ 0.6
MSH4O15457 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
MSH4O15457 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH4O15457 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH4O15457 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms