Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
VRK3Q8IV63 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
VRK3Q8IV63 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 MIR574-201ENST00000385209 96 ntBASIC16.46■□□□□ 0.23
VRK3Q8IV63 MIR940-201ENST00000401276 94 ntBASIC16.46■□□□□ 0.23
VRK3Q8IV63 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 MED15P5-201ENST00000423150 992 ntBASIC16.46■□□□□ 0.23
VRK3Q8IV63 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 AC027601.4-201ENST00000611259 610 ntBASIC16.46■□□□□ 0.23
VRK3Q8IV63 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.46■□□□□ 0.23
VRK3Q8IV63 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
VRK3Q8IV63 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
VRK3Q8IV63 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 AC087641.1-201ENST00000557561 1021 ntBASIC16.45■□□□□ 0.22
VRK3Q8IV63 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.45■□□□□ 0.22
VRK3Q8IV63 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 AC004877.2-201ENST00000623941 599 ntBASIC16.45■□□□□ 0.22
VRK3Q8IV63 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.45■□□□□ 0.22
VRK3Q8IV63 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VRK3Q8IV63 AC012569.1-201ENST00000591191 1524 ntBASIC16.45■□□□□ 0.22
VRK3Q8IV63 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 HMGA1P7-201ENST00000406908 502 ntBASIC16.44■□□□□ 0.22
VRK3Q8IV63 KRT18P3-201ENST00000451602 1288 ntBASIC16.44■□□□□ 0.22
VRK3Q8IV63 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 MIR4515-201ENST00000584082 81 ntBASIC16.44■□□□□ 0.22
VRK3Q8IV63 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 FAM197Y3-203ENST00000618346 717 ntBASIC16.44■□□□□ 0.22
VRK3Q8IV63 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VRK3Q8IV63 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.44■□□□□ 0.22
VRK3Q8IV63 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms