Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sh3rf1Q69ZI1 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 AC164565.1-201ENSMUST00000217520 1484 ntBASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sh3rf1Q69ZI1 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Gm42790-201ENSMUST00000201268 969 ntBASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Sh3rf1Q69ZI1 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Gm15693-201ENSMUST00000120470 637 ntBASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.09□□□□□ -0.15
Sh3rf1Q69ZI1 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms