Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 OR6D1P-202ENST00000641007 5290 ntBASIC15.15■□□□□ 0.02
ZIC3O60481 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 PMS2P4-201ENST00000412466 1052 ntBASIC15.15■□□□□ 0.02
ZIC3O60481 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
ZIC3O60481 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.15■□□□□ 0.02
ZIC3O60481 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 ACTG1P14-201ENST00000446382 1122 ntBASIC15.15■□□□□ 0.02
ZIC3O60481 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 AC109635.5-201ENST00000533593 962 ntBASIC15.15■□□□□ 0.02
ZIC3O60481 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
ZIC3O60481 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
ZIC3O60481 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
ZIC3O60481 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.15■□□□□ 0.02
ZIC3O60481 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
ZIC3O60481 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.15■□□□□ 0.02
ZIC3O60481 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
ZIC3O60481 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ZIC3O60481 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ZIC3O60481 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.14■□□□□ 0.01
ZIC3O60481 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
ZIC3O60481 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
ZIC3O60481 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
ZIC3O60481 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
ZIC3O60481 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
ZIC3O60481 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
ZIC3O60481 AC211486.1-202ENST00000416371 468 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.14■□□□□ 0.01
ZIC3O60481 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.14■□□□□ 0.01
ZIC3O60481 CEND1P1-201ENST00000451006 455 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 AC211476.1-201ENST00000503899 468 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.14■□□□□ 0.01
ZIC3O60481 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
ZIC3O60481 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 MIR3909-201ENST00000579518 119 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 AL031055.1-201ENST00000606362 631 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 AC099522.2-201ENST00000607001 744 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
ZIC3O60481 AC134684.3-201ENST00000641758 218 ntBASIC15.14■□□□□ 0.01
ZIC3O60481 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
ZIC3O60481 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ZIC3O60481 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.14■□□□□ 0.01
ZIC3O60481 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.14■□□□□ 0.01
ZIC3O60481 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ZIC3O60481 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
ZIC3O60481 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ZIC3O60481 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms