Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm13342-201ENSMUST00000121055 207 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm44364-201ENSMUST00000198368 141 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm43118-201ENSMUST00000199149 775 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 AC073947.2-201ENSMUST00000215888 1130 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm18934-201ENSMUST00000216671 1044 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Gm10268-201ENSMUST00000085340 555 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.68■□□□□ 0.1
Syne4Q8CII8 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Syne4Q8CII8 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Gm13369-201ENSMUST00000119442 987 ntBASIC15.67■□□□□ 0.1
Syne4Q8CII8 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 CT485787.1-201ENSMUST00000225617 968 ntBASIC15.67■□□□□ 0.1
Syne4Q8CII8 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Syne4Q8CII8 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.66■□□□□ 0.1
Syne4Q8CII8 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Gm11400-201ENSMUST00000120853 1214 ntBASIC15.66■□□□□ 0.1
Syne4Q8CII8 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC15.66■□□□□ 0.1
Syne4Q8CII8 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Snora73a-201ENSMUST00000082453 205 ntBASIC15.66■□□□□ 0.1
Syne4Q8CII8 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Syne4Q8CII8 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms