Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdx1P18111 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 AC125108.1-201ENSMUST00000218986 2330 ntBASIC11.29□□□□□ -0.6
Cdx1P18111 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Gm4913-201ENSMUST00000117075 1290 ntBASIC11.29□□□□□ -0.6
Cdx1P18111 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Cdx1P18111 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
Cdx1P18111 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Gm25911-201ENSMUST00000157621 56 ntBASIC11.29□□□□□ -0.6
Cdx1P18111 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC11.29□□□□□ -0.6
Cdx1P18111 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdx1P18111 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Cdx1P18111 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Cdx1P18111 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC11.29□□□□□ -0.6
Cdx1P18111 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Gm45053-201ENSMUST00000206112 2499 ntBASIC11.29□□□□□ -0.6
Cdx1P18111 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.29□□□□□ -0.6
Cdx1P18111 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Cdx1P18111 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC11.28□□□□□ -0.6
Cdx1P18111 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.28□□□□□ -0.6
Cdx1P18111 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC11.28□□□□□ -0.6
Cdx1P18111 Gm15358-201ENSMUST00000119249 520 ntBASIC11.28□□□□□ -0.6
Cdx1P18111 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC11.28□□□□□ -0.6
Cdx1P18111 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC11.28□□□□□ -0.6
Cdx1P18111 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Bloc1s5-203ENSMUST00000224902 612 ntBASIC11.28□□□□□ -0.6
Cdx1P18111 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC11.28□□□□□ -0.6
Cdx1P18111 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Cdx1P18111 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdx1P18111 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.6
Cdx1P18111 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdx1P18111 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdx1P18111 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC11.27□□□□□ -0.61
Cdx1P18111 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms