Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm5874-201ENSMUST00000096101 508 ntBASIC18.9■□□□□ 0.62
Col7a1Q63870 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Col7a1Q63870 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col7a1Q63870 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Col7a1Q63870 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Col7a1Q63870 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col7a1Q63870 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col7a1Q63870 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col7a1Q63870 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col7a1Q63870 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col7a1Q63870 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col7a1Q63870 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col7a1Q63870 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col7a1Q63870 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col7a1Q63870 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col7a1Q63870 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.88■□□□□ 0.61
Col7a1Q63870 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.88■□□□□ 0.61
Col7a1Q63870 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.88■□□□□ 0.61
Col7a1Q63870 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col7a1Q63870 Gm7291-201ENSMUST00000199147 382 ntBASIC18.87■□□□□ 0.61
Col7a1Q63870 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.87■□□□□ 0.61
Col7a1Q63870 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col7a1Q63870 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col7a1Q63870 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Col7a1Q63870 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col7a1Q63870 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col7a1Q63870 Gm10849-201ENSMUST00000100397 618 ntBASIC18.86■□□□□ 0.61
Col7a1Q63870 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col7a1Q63870 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
Col7a1Q63870 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col7a1Q63870 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col7a1Q63870 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col7a1Q63870 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col7a1Q63870 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col7a1Q63870 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col7a1Q63870 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col7a1Q63870 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col7a1Q63870 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col7a1Q63870 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col7a1Q63870 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col7a1Q63870 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.84■□□□□ 0.61
Col7a1Q63870 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.84■□□□□ 0.61
Col7a1Q63870 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col7a1Q63870 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col7a1Q63870 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col7a1Q63870 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.84■□□□□ 0.61
Col7a1Q63870 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col7a1Q63870 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Col7a1Q63870 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col7a1Q63870 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Col7a1Q63870 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
Col7a1Q63870 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col7a1Q63870 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col7a1Q63870 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col7a1Q63870 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.82■□□□□ 0.6
Col7a1Q63870 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col7a1Q63870 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col7a1Q63870 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col7a1Q63870 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col7a1Q63870 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col7a1Q63870 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col7a1Q63870 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col7a1Q63870 Gm26571-201ENSMUST00000181399 666 ntBASIC18.81■□□□□ 0.6
Col7a1Q63870 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.81■□□□□ 0.6
Col7a1Q63870 Gm4419-202ENSMUST00000226239 1431 ntBASIC18.81■□□□□ 0.6
Col7a1Q63870 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col7a1Q63870 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col7a1Q63870 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col7a1Q63870 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col7a1Q63870 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col7a1Q63870 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col7a1Q63870 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.8■□□□□ 0.6
Col7a1Q63870 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.8■□□□□ 0.6
Col7a1Q63870 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col7a1Q63870 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.79■□□□□ 0.6
Col7a1Q63870 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col7a1Q63870 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col7a1Q63870 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.78■□□□□ 0.6
Col7a1Q63870 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col7a1Q63870 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col7a1Q63870 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col7a1Q63870 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.77■□□□□ 0.6
Col7a1Q63870 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col7a1Q63870 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col7a1Q63870 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.77■□□□□ 0.59
Col7a1Q63870 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col7a1Q63870 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col7a1Q63870 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col7a1Q63870 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col7a1Q63870 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC18.75■□□□□ 0.59
Col7a1Q63870 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col7a1Q63870 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col7a1Q63870 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col7a1Q63870 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col7a1Q63870 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col7a1Q63870 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col7a1Q63870 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.74■□□□□ 0.59
Col7a1Q63870 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.74■□□□□ 0.59
Col7a1Q63870 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col7a1Q63870 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms