Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Pcdh1F7BJK1 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Pcdh1F7BJK1 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.58■□□□□ 0.72
Pcdh1F7BJK1 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Pcdh1F7BJK1 Gm12818-201ENSMUST00000117562 1349 ntBASIC19.56■□□□□ 0.72
Pcdh1F7BJK1 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Pcdh1F7BJK1 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.56■□□□□ 0.72
Pcdh1F7BJK1 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Pcdh1F7BJK1 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Pcdh1F7BJK1 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Pcdh1F7BJK1 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Pcdh1F7BJK1 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.54■□□□□ 0.72
Pcdh1F7BJK1 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Pcdh1F7BJK1 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Pcdh1F7BJK1 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Pcdh1F7BJK1 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Pcdh1F7BJK1 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Pcdh1F7BJK1 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC19.53■□□□□ 0.72
Pcdh1F7BJK1 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Pcdh1F7BJK1 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Pcdh1F7BJK1 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Pcdh1F7BJK1 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Pcdh1F7BJK1 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.52■□□□□ 0.71
Pcdh1F7BJK1 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.52■□□□□ 0.71
Pcdh1F7BJK1 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Mir3960-201ENSMUST00000198213 73 ntBASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Gm7432-201ENSMUST00000210343 879 ntBASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Terc-201ENSMUST00000082862 423 ntBASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Pcdh1F7BJK1 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Pcdh1F7BJK1 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Pcdh1F7BJK1 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Pcdh1F7BJK1 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Pcdh1F7BJK1 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Pcdh1F7BJK1 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Pcdh1F7BJK1 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Pcdh1F7BJK1 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Pcdh1F7BJK1 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Pcdh1F7BJK1 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC19.49■□□□□ 0.71
Pcdh1F7BJK1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Pcdh1F7BJK1 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 Gm45364-201ENSMUST00000210883 159 ntBASIC19.48■□□□□ 0.71
Pcdh1F7BJK1 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 AC154454.1-201ENSMUST00000225253 216 ntBASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Pcdh1F7BJK1 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Pcdh1F7BJK1 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms