Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Gm44065-201ENSMUST00000203184 3527 ntBASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Pcdh1F7BJK1 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gm12882-201ENSMUST00000121696 517 ntBASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Mir7036b-201ENSMUST00000184791 63 ntBASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Pcdh1F7BJK1 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Pcdh1F7BJK1 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gm13410-201ENSMUST00000117058 1415 ntBASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gm42928-201ENSMUST00000197338 3339 ntBASIC12.65□□□□□ -0.38
Pcdh1F7BJK1 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms