Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 MTDHP4-201ENST00000600287 670 ntBASIC15.16■□□□□ 0.02
SKA3Q8IX90 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 AL121912.1-201ENST00000603683 238 ntBASIC15.16■□□□□ 0.02
SKA3Q8IX90 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.16■□□□□ 0.02
SKA3Q8IX90 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SKA3Q8IX90 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 LINC00982-205ENST00000420957 435 ntBASIC15.15■□□□□ 0.02
SKA3Q8IX90 ACTG1P4-201ENST00000425123 1122 ntBASIC15.15■□□□□ 0.02
SKA3Q8IX90 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 AC079781.3-201ENST00000449110 356 ntBASIC15.15■□□□□ 0.02
SKA3Q8IX90 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.15■□□□□ 0.02
SKA3Q8IX90 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SKA3Q8IX90 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 AP001094.4-201ENST00000579008 2176 ntBASIC15.14■□□□□ 0.01
SKA3Q8IX90 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 FAAHP1-202ENST00000446499 1238 ntBASIC15.14■□□□□ 0.01
SKA3Q8IX90 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 TP73-AS1-207ENST00000624167 988 ntBASIC15.14■□□□□ 0.01
SKA3Q8IX90 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.14■□□□□ 0.01
SKA3Q8IX90 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SKA3Q8IX90 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms