Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL4A4P53420 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A4P53420 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A4P53420 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 SPTLC1P1-201ENST00000447199 261 ntBASIC18.05■□□□□ 0.48
COL4A4P53420 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A4P53420 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A4P53420 AC005412.3-201ENST00000580309 715 ntBASIC18.05■□□□□ 0.48
COL4A4P53420 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 CROCCP2-202ENST00000412962 2773 ntBASIC18.05■□□□□ 0.48
COL4A4P53420 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A4P53420 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.04■□□□□ 0.48
COL4A4P53420 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.04■□□□□ 0.48
COL4A4P53420 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.04■□□□□ 0.48
COL4A4P53420 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL4A4P53420 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 MIR3909-201ENST00000579518 119 ntBASIC18.04■□□□□ 0.48
COL4A4P53420 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A4P53420 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A4P53420 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 EGFEM1P-202ENST00000431685 1563 ntBASIC18.04■□□□□ 0.48
COL4A4P53420 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A4P53420 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL4A4P53420 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A4P53420 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A4P53420 RNU1-129P-201ENST00000384064 167 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A4P53420 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 ACA64.2-201ENST00000459014 129 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.03■□□□□ 0.48
COL4A4P53420 GIMAP3P-201ENST00000495150 836 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A4P53420 U1.21-201ENST00000580816 167 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 AC027307.2-201ENST00000591252 911 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 AC008267.7-201ENST00000624570 1194 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A4P53420 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A4P53420 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL4A4P53420 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL4A4P53420 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL4A4P53420 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 AC027369.6-201ENST00000525520 931 ntBASIC18.03■□□□□ 0.48
COL4A4P53420 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A4P53420 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A4P53420 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A4P53420 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A4P53420 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms