Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC23.66■■□□□ 1.38
NPHP4O75161 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
NPHP4O75161 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC23.66■■□□□ 1.38
NPHP4O75161 RN7SL219P-201ENST00000582872 296 ntBASIC23.66■■□□□ 1.38
NPHP4O75161 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
NPHP4O75161 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC23.66■■□□□ 1.38
NPHP4O75161 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC23.66■■□□□ 1.38
NPHP4O75161 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC23.66■■□□□ 1.38
NPHP4O75161 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
NPHP4O75161 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
NPHP4O75161 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.65■■□□□ 1.38
NPHP4O75161 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
NPHP4O75161 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 AL589987.1-201ENST00000453380 819 ntBASIC23.65■■□□□ 1.38
NPHP4O75161 USP32P1-208ENST00000506594 1164 ntBASIC23.65■■□□□ 1.38
NPHP4O75161 RNA5SP410-201ENST00000516285 106 ntBASIC23.65■■□□□ 1.38
NPHP4O75161 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC23.65■■□□□ 1.38
NPHP4O75161 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC23.65■■□□□ 1.38
NPHP4O75161 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC23.65■■□□□ 1.38
NPHP4O75161 AC015936.2-201ENST00000593177 259 ntBASIC23.65■■□□□ 1.38
NPHP4O75161 AC093726.1-201ENST00000608064 963 ntBASIC23.65■■□□□ 1.38
NPHP4O75161 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NPHP4O75161 AC073439.1-201ENST00000624121 1774 ntBASIC23.64■■□□□ 1.38
NPHP4O75161 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP4O75161 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC23.64■■□□□ 1.38
NPHP4O75161 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP4O75161 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP4O75161 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP4O75161 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP4O75161 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NPHP4O75161 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC23.64■■□□□ 1.38
NPHP4O75161 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP4O75161 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP4O75161 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP4O75161 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP4O75161 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
NPHP4O75161 MEP1AP4-201ENST00000423244 1087 ntBASIC23.64■■□□□ 1.37
NPHP4O75161 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC23.64■■□□□ 1.37
NPHP4O75161 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC23.64■■□□□ 1.37
NPHP4O75161 AL583810.1-201ENST00000553344 1045 ntBASIC23.64■■□□□ 1.37
NPHP4O75161 MIR4492-201ENST00000581627 80 ntBASIC23.64■■□□□ 1.37
NPHP4O75161 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC23.64■■□□□ 1.37
NPHP4O75161 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC23.64■■□□□ 1.37
NPHP4O75161 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NPHP4O75161 LINC00304-203ENST00000565008 1864 ntBASIC23.64■■□□□ 1.37
NPHP4O75161 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP4O75161 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP4O75161 GOLGA2P9-201ENST00000596977 1937 ntBASIC23.63■■□□□ 1.37
NPHP4O75161 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP4O75161 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP4O75161 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC23.63■■□□□ 1.37
NPHP4O75161 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
NPHP4O75161 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC23.63■■□□□ 1.37
NPHP4O75161 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP4O75161 RPSAP52-203ENST00000622976 1023 ntBASIC23.63■■□□□ 1.37
NPHP4O75161 AC004461.2-201ENST00000629517 803 ntBASIC23.63■■□□□ 1.37
NPHP4O75161 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP4O75161 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP4O75161 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
NPHP4O75161 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP4O75161 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.63■■□□□ 1.37
NPHP4O75161 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC23.63■■□□□ 1.37
NPHP4O75161 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NPHP4O75161 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP4O75161 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 AC099548.2-209ENST00000480264 625 ntBASIC23.62■■□□□ 1.37
NPHP4O75161 PARP8-206ENST00000503665 572 ntTSL 4 BASIC23.62■■□□□ 1.37
NPHP4O75161 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC23.62■■□□□ 1.37
NPHP4O75161 AC244093.1-201ENST00000610837 814 ntBASIC23.62■■□□□ 1.37
NPHP4O75161 RPS24-214ENST00000613865 538 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP4O75161 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
NPHP4O75161 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NPHP4O75161 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP4O75161 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC23.62■■□□□ 1.37
NPHP4O75161 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms