Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCN3P51790 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.72■□□□□ 0.59
CLCN3P51790 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLCN3P51790 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.71■□□□□ 0.59
CLCN3P51790 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
CLCN3P51790 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.71■□□□□ 0.59
CLCN3P51790 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 ADH5P3-201ENST00000433842 1137 ntBASIC18.71■□□□□ 0.59
CLCN3P51790 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.71■□□□□ 0.59
CLCN3P51790 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CLCN3P51790 DUX4L17-201ENST00000557360 1267 ntBASIC18.71■□□□□ 0.59
CLCN3P51790 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.71■□□□□ 0.59
CLCN3P51790 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.71■□□□□ 0.59
CLCN3P51790 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.71■□□□□ 0.59
CLCN3P51790 AC099522.2-201ENST00000607001 744 ntBASIC18.71■□□□□ 0.59
CLCN3P51790 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.71■□□□□ 0.59
CLCN3P51790 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CLCN3P51790 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.71■□□□□ 0.59
CLCN3P51790 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CLCN3P51790 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.71■□□□□ 0.59
CLCN3P51790 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CLCN3P51790 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLCN3P51790 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
CLCN3P51790 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCN3P51790 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.7■□□□□ 0.58
CLCN3P51790 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 AC002056.1-201ENST00000395613 760 ntBASIC18.7■□□□□ 0.58
CLCN3P51790 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.7■□□□□ 0.58
CLCN3P51790 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.7■□□□□ 0.58
CLCN3P51790 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.7■□□□□ 0.58
CLCN3P51790 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
CLCN3P51790 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.7■□□□□ 0.58
CLCN3P51790 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCN3P51790 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.7■□□□□ 0.58
CLCN3P51790 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.7■□□□□ 0.58
CLCN3P51790 AL513210.1-201ENST00000629608 234 ntBASIC18.7■□□□□ 0.58
CLCN3P51790 AC105339.1-204ENST00000636249 355 ntBASIC18.7■□□□□ 0.58
CLCN3P51790 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLCN3P51790 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCN3P51790 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CLCN3P51790 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCN3P51790 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLCN3P51790 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.7■□□□□ 0.58
CLCN3P51790 SLC22A20-204ENST00000530038 1673 ntBASIC18.69■□□□□ 0.58
CLCN3P51790 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 AC012569.1-201ENST00000591191 1524 ntBASIC18.69■□□□□ 0.58
CLCN3P51790 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.69■□□□□ 0.58
CLCN3P51790 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CLCN3P51790 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CLCN3P51790 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.69■□□□□ 0.58
CLCN3P51790 AC004461.1-201ENST00000412461 403 ntBASIC18.69■□□□□ 0.58
CLCN3P51790 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.69■□□□□ 0.58
CLCN3P51790 AP000344.2-201ENST00000512987 629 ntBASIC18.69■□□□□ 0.58
CLCN3P51790 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.69■□□□□ 0.58
CLCN3P51790 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 AC027796.2-201ENST00000575326 344 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms