Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 AC073592.4-201ENST00000623827 446 ntBASIC16.15■□□□□ 0.18
SOX3P41225 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
SOX3P41225 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 PCDHB19P-201ENST00000570871 2371 ntBASIC16.15■□□□□ 0.18
SOX3P41225 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX3P41225 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
SOX3P41225 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
SOX3P41225 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
SOX3P41225 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX3P41225 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SOX3P41225 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 REXO1L11P-201ENST00000620964 1927 ntBASIC16.14■□□□□ 0.17
SOX3P41225 SIGLEC16-201ENST00000599858 1437 ntBASIC16.14■□□□□ 0.17
SOX3P41225 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX3P41225 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SOX3P41225 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SOX3P41225 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX3P41225 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SOX3P41225 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX3P41225 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 AC002558.1-201ENST00000488906 803 ntBASIC16.14■□□□□ 0.17
SOX3P41225 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX3P41225 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 AL049840.3-201ENST00000602669 611 ntBASIC16.14■□□□□ 0.17
SOX3P41225 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 FAM215A-202ENST00000632077 792 ntBASIC16.14■□□□□ 0.17
SOX3P41225 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.14■□□□□ 0.17
SOX3P41225 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SOX3P41225 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SOX3P41225 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX3P41225 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX3P41225 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX3P41225 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 AC003669.1-201ENST00000334569 611 ntBASIC16.13■□□□□ 0.17
SOX3P41225 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.13■□□□□ 0.17
SOX3P41225 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.13■□□□□ 0.17
SOX3P41225 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 AL020989.1-201ENST00000422979 469 ntBASIC16.13■□□□□ 0.17
SOX3P41225 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 OR7E14P-202ENST00000530490 1290 ntBASIC16.13■□□□□ 0.17
SOX3P41225 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 MIR7706-201ENST00000613747 67 ntBASIC16.13■□□□□ 0.17
SOX3P41225 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 AL022326.1-202ENST00000641533 845 ntBASIC16.13■□□□□ 0.17
SOX3P41225 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 AC133963.1-201ENST00000504166 1679 ntBASIC16.13■□□□□ 0.17
SOX3P41225 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.13■□□□□ 0.17
SOX3P41225 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX3P41225 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms