Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.47■□□□□ 0.39
VCANP13611 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.47■□□□□ 0.39
VCANP13611 AC007431.3-201ENST00000623221 587 ntBASIC17.47■□□□□ 0.39
VCANP13611 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.47■□□□□ 0.39
VCANP13611 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
VCANP13611 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VCANP13611 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.47■□□□□ 0.39
VCANP13611 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.47■□□□□ 0.39
VCANP13611 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.47■□□□□ 0.39
VCANP13611 CTBP2P5-201ENST00000454986 1264 ntBASIC17.47■□□□□ 0.39
VCANP13611 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.47■□□□□ 0.39
VCANP13611 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.47■□□□□ 0.39
VCANP13611 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VCANP13611 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VCANP13611 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.46■□□□□ 0.39
VCANP13611 AC007551.1-201ENST00000457394 519 ntBASIC17.46■□□□□ 0.39
VCANP13611 RARRES2P9-201ENST00000565168 469 ntBASIC17.46■□□□□ 0.39
VCANP13611 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.46■□□□□ 0.39
VCANP13611 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 HMGA1P7-201ENST00000406908 502 ntBASIC17.46■□□□□ 0.39
VCANP13611 FO681548.1-201ENST00000455617 1132 ntBASIC17.46■□□□□ 0.39
VCANP13611 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
VCANP13611 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.46■□□□□ 0.39
VCANP13611 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.46■□□□□ 0.39
VCANP13611 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.46■□□□□ 0.39
VCANP13611 AC087163.2-201ENST00000457299 853 ntBASIC17.46■□□□□ 0.39
VCANP13611 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.46■□□□□ 0.39
VCANP13611 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.46■□□□□ 0.39
VCANP13611 BTNL10-201ENST00000595971 695 ntBASIC17.46■□□□□ 0.39
VCANP13611 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
VCANP13611 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VCANP13611 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
VCANP13611 AC005332.7-201ENST00000614046 2005 ntBASIC17.45■□□□□ 0.38
VCANP13611 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.45■□□□□ 0.38
VCANP13611 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.45■□□□□ 0.38
VCANP13611 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.45■□□□□ 0.38
VCANP13611 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.45■□□□□ 0.38
VCANP13611 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.45■□□□□ 0.38
VCANP13611 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.45■□□□□ 0.38
VCANP13611 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.45■□□□□ 0.38
VCANP13611 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.45■□□□□ 0.38
VCANP13611 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.45■□□□□ 0.38
VCANP13611 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.45■□□□□ 0.38
VCANP13611 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 AC016027.1-202ENST00000607927 1699 ntBASIC17.45■□□□□ 0.38
VCANP13611 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.45■□□□□ 0.38
VCANP13611 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.45■□□□□ 0.38
VCANP13611 AP001258.2-201ENST00000529891 490 ntBASIC17.45■□□□□ 0.38
VCANP13611 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.45■□□□□ 0.38
VCANP13611 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VCANP13611 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.44■□□□□ 0.38
VCANP13611 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.44■□□□□ 0.38
VCANP13611 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.44■□□□□ 0.38
VCANP13611 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.44■□□□□ 0.38
VCANP13611 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.44■□□□□ 0.38
VCANP13611 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.44■□□□□ 0.38
VCANP13611 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.44■□□□□ 0.38
VCANP13611 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VCANP13611 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms