Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PDPK2P-202ENST00000562415 1191 ntBASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 AC023141.13-201ENST00000604991 943 ntBASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 AL390961.4-201ENST00000623958 2535 ntBASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDDC3Q8N4P3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 PAWRP1-201ENST00000451083 565 ntBASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 AC004449.1-201ENST00000564240 433 ntBASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.24■□□□□ 0.35
HDDC3Q8N4P3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 AC133963.1-201ENST00000504166 1679 ntBASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 ACTG1P14-201ENST00000446382 1122 ntBASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 SPCS2P1-201ENST00000561636 679 ntBASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 AC093028.1-201ENST00000622998 982 ntBASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 PKD1P1-201ENST00000458669 6805 ntBASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.23■□□□□ 0.35
HDDC3Q8N4P3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 AC092474.2-201ENST00000424288 719 ntBASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 COX20P2-201ENST00000452636 358 ntBASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 AC074386.1-202ENST00000463561 864 ntBASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 AP000344.2-201ENST00000512987 629 ntBASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.22■□□□□ 0.35
HDDC3Q8N4P3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms