Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Notumos-201ENSMUST00000151998 2659 ntBASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim39Q9ESN2 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim39Q9ESN2 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trim39Q9ESN2 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.25■□□□□ 0.83
Trim39Q9ESN2 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim39Q9ESN2 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trim39Q9ESN2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim39Q9ESN2 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
Trim39Q9ESN2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim39Q9ESN2 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.24■□□□□ 0.83
Trim39Q9ESN2 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim39Q9ESN2 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim39Q9ESN2 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim39Q9ESN2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim39Q9ESN2 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Trim39Q9ESN2 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.22■□□□□ 0.83
Trim39Q9ESN2 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Trim39Q9ESN2 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.22■□□□□ 0.83
Trim39Q9ESN2 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Trim39Q9ESN2 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim39Q9ESN2 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim39Q9ESN2 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim39Q9ESN2 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim39Q9ESN2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim39Q9ESN2 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim39Q9ESN2 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.2■□□□□ 0.82
Trim39Q9ESN2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim39Q9ESN2 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Trim39Q9ESN2 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim39Q9ESN2 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim39Q9ESN2 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim39Q9ESN2 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim39Q9ESN2 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim39Q9ESN2 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.19■□□□□ 0.82
Trim39Q9ESN2 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim39Q9ESN2 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Terc-201ENSMUST00000082862 423 ntBASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim39Q9ESN2 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim39Q9ESN2 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim39Q9ESN2 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.17■□□□□ 0.82
Trim39Q9ESN2 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim39Q9ESN2 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim39Q9ESN2 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim39Q9ESN2 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim39Q9ESN2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim39Q9ESN2 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim39Q9ESN2 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim39Q9ESN2 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim39Q9ESN2 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim39Q9ESN2 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim39Q9ESN2 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim39Q9ESN2 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim39Q9ESN2 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim39Q9ESN2 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim39Q9ESN2 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim39Q9ESN2 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim39Q9ESN2 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.12■□□□□ 0.81
Trim39Q9ESN2 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trim39Q9ESN2 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms