Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Smarca1Q6PGB8 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Smarca1Q6PGB8 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC24.49■■□□□ 1.51
Smarca1Q6PGB8 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Smarca1Q6PGB8 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
Smarca1Q6PGB8 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 Gm10420-201ENSMUST00000121713 882 ntBASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Smarca1Q6PGB8 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Smarca1Q6PGB8 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC24.45■■□□□ 1.51
Smarca1Q6PGB8 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Smarca1Q6PGB8 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Smarca1Q6PGB8 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Smarca1Q6PGB8 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Smarca1Q6PGB8 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Smarca1Q6PGB8 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Smarca1Q6PGB8 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.44■■□□□ 1.5
Smarca1Q6PGB8 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Smarca1Q6PGB8 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Smarca1Q6PGB8 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Smarca1Q6PGB8 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Smarca1Q6PGB8 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Smarca1Q6PGB8 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Smarca1Q6PGB8 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Smarca1Q6PGB8 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Smarca1Q6PGB8 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC24.42■■□□□ 1.5
Smarca1Q6PGB8 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Smarca1Q6PGB8 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Smarca1Q6PGB8 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Smarca1Q6PGB8 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC24.41■■□□□ 1.5
Smarca1Q6PGB8 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Smarca1Q6PGB8 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Smarca1Q6PGB8 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Smarca1Q6PGB8 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Smarca1Q6PGB8 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
Smarca1Q6PGB8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
Smarca1Q6PGB8 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Smarca1Q6PGB8 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.39■■□□□ 1.49
Smarca1Q6PGB8 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
Smarca1Q6PGB8 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Smarca1Q6PGB8 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Smarca1Q6PGB8 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Smarca1Q6PGB8 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Smarca1Q6PGB8 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 AC117769.4-201ENSMUST00000225679 685 ntBASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
Smarca1Q6PGB8 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Smarca1Q6PGB8 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Smarca1Q6PGB8 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
Smarca1Q6PGB8 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Smarca1Q6PGB8 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC24.36■■□□□ 1.49
Smarca1Q6PGB8 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Smarca1Q6PGB8 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Smarca1Q6PGB8 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC24.34■■□□□ 1.49
Smarca1Q6PGB8 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
Smarca1Q6PGB8 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Smarca1Q6PGB8 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Smarca1Q6PGB8 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
Smarca1Q6PGB8 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Smarca1Q6PGB8 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC24.33■■□□□ 1.49
Smarca1Q6PGB8 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC24.33■■□□□ 1.49
Smarca1Q6PGB8 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Smarca1Q6PGB8 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
Smarca1Q6PGB8 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms