Protein–RNA interactions for Protein: P59708

Sf3b6, Splicing factor 3B subunit 6, mousemouse

Known RBP Predictions only

Length 125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b6P59708 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sf3b6P59708 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Sf3b6P59708 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC19.48■□□□□ 0.71
Sf3b6P59708 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC19.48■□□□□ 0.71
Sf3b6P59708 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Sf3b6P59708 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Sf3b6P59708 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.47■□□□□ 0.71
Sf3b6P59708 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
Sf3b6P59708 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.46■□□□□ 0.71
Sf3b6P59708 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC19.46■□□□□ 0.71
Sf3b6P59708 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Sf3b6P59708 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sf3b6P59708 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Sf3b6P59708 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sf3b6P59708 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Sf3b6P59708 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Sf3b6P59708 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Sf3b6P59708 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.43■□□□□ 0.7
Sf3b6P59708 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Sf3b6P59708 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Sf3b6P59708 Gm22567-201ENSMUST00000175542 342 ntBASIC19.42■□□□□ 0.7
Sf3b6P59708 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.41■□□□□ 0.7
Sf3b6P59708 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.41■□□□□ 0.7
Sf3b6P59708 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Sf3b6P59708 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Sf3b6P59708 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Sf3b6P59708 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.4■□□□□ 0.7
Sf3b6P59708 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b6P59708 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Sf3b6P59708 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Sf3b6P59708 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.39■□□□□ 0.69
Sf3b6P59708 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Sf3b6P59708 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Sf3b6P59708 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.38■□□□□ 0.69
Sf3b6P59708 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Sf3b6P59708 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b6P59708 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Sf3b6P59708 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Sf3b6P59708 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b6P59708 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b6P59708 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sf3b6P59708 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Sf3b6P59708 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.35■□□□□ 0.69
Sf3b6P59708 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC19.35■□□□□ 0.69
Sf3b6P59708 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sf3b6P59708 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sf3b6P59708 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sf3b6P59708 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sf3b6P59708 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Sf3b6P59708 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Sf3b6P59708 Notumos-201ENSMUST00000151998 2659 ntBASIC19.34■□□□□ 0.69
Sf3b6P59708 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Sf3b6P59708 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC19.33■□□□□ 0.68
Sf3b6P59708 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sf3b6P59708 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC19.32■□□□□ 0.68
Sf3b6P59708 Gm7432-201ENSMUST00000210343 879 ntBASIC19.32■□□□□ 0.68
Sf3b6P59708 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.32■□□□□ 0.68
Sf3b6P59708 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Sf3b6P59708 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sf3b6P59708 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms