Protein–RNA interactions for Protein: P41245

Mmp9, Matrix metalloproteinase-9, mousemouse

Predictions only

Length 730 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp9P41245 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Mmp9P41245 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Mmp9P41245 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Mmp9P41245 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Mmp9P41245 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Mmp9P41245 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Mmp9P41245 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp9P41245 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp9P41245 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Mmp9P41245 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp9P41245 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.25■□□□□ 0.51
Mmp9P41245 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp9P41245 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp9P41245 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Mmp9P41245 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Mmp9P41245 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Mmp9P41245 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Mmp9P41245 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Mmp9P41245 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Mmp9P41245 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Mmp9P41245 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC18.23■□□□□ 0.51
Mmp9P41245 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Mmp9P41245 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Mmp9P41245 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Mmp9P41245 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Mmp9P41245 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Mmp9P41245 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Mmp9P41245 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Mmp9P41245 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Mmp9P41245 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Mmp9P41245 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Mmp9P41245 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Mmp9P41245 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.2■□□□□ 0.5
Mmp9P41245 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Mmp9P41245 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Mmp9P41245 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Mmp9P41245 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Mmp9P41245 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.19■□□□□ 0.5
Mmp9P41245 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Mmp9P41245 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Mmp9P41245 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Mmp9P41245 Hsf1-207ENSMUST00000228371 2102 ntBASIC18.19■□□□□ 0.5
Mmp9P41245 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Mmp9P41245 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Mmp9P41245 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Mmp9P41245 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Mmp9P41245 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Mmp9P41245 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Mmp9P41245 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Mmp9P41245 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC18.17■□□□□ 0.5
Mmp9P41245 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.17■□□□□ 0.5
Mmp9P41245 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Mmp9P41245 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Mmp9P41245 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC18.16■□□□□ 0.5
Mmp9P41245 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.16■□□□□ 0.5
Mmp9P41245 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Mmp9P41245 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Mmp9P41245 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC18.15■□□□□ 0.5
Mmp9P41245 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Mmp9P41245 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Mmp9P41245 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Mmp9P41245 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Mmp9P41245 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Mmp9P41245 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Mmp9P41245 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Mmp9P41245 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Mmp9P41245 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Mmp9P41245 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Mmp9P41245 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Mmp9P41245 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Mmp9P41245 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Mmp9P41245 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Mmp9P41245 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Mmp9P41245 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
Mmp9P41245 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Mmp9P41245 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Mmp9P41245 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Mmp9P41245 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Mmp9P41245 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
Mmp9P41245 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Mmp9P41245 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Mmp9P41245 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms