Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Col18a1P39061 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC30.57■■■□□ 2.48
Col18a1P39061 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Col18a1P39061 Gm12821-201ENSMUST00000120022 600 ntBASIC30.56■■■□□ 2.48
Col18a1P39061 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC30.56■■■□□ 2.48
Col18a1P39061 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col18a1P39061 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
Col18a1P39061 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col18a1P39061 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC30.56■■■□□ 2.48
Col18a1P39061 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Col18a1P39061 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Col18a1P39061 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Col18a1P39061 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col18a1P39061 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Col18a1P39061 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Col18a1P39061 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Col18a1P39061 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC30.54■■■□□ 2.48
Col18a1P39061 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Col18a1P39061 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC30.52■■■□□ 2.48
Col18a1P39061 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Col18a1P39061 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.48
Col18a1P39061 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
Col18a1P39061 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC30.51■■■□□ 2.47
Col18a1P39061 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col18a1P39061 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col18a1P39061 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Col18a1P39061 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col18a1P39061 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
Col18a1P39061 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC30.49■■■□□ 2.47
Col18a1P39061 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC30.49■■■□□ 2.47
Col18a1P39061 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col18a1P39061 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col18a1P39061 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Col18a1P39061 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC30.48■■■□□ 2.47
Col18a1P39061 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col18a1P39061 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col18a1P39061 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col18a1P39061 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Col18a1P39061 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC30.47■■■□□ 2.47
Col18a1P39061 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC30.46■■■□□ 2.47
Col18a1P39061 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC30.46■■■□□ 2.47
Col18a1P39061 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Col18a1P39061 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC30.46■■■□□ 2.47
Col18a1P39061 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC30.46■■■□□ 2.47
Col18a1P39061 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC30.46■■■□□ 2.47
Col18a1P39061 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Col18a1P39061 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
Col18a1P39061 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC30.45■■■□□ 2.46
Col18a1P39061 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
Col18a1P39061 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col18a1P39061 Gm28536-201ENSMUST00000190971 1317 ntBASIC30.45■■■□□ 2.46
Col18a1P39061 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Col18a1P39061 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC30.44■■■□□ 2.46
Col18a1P39061 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Col18a1P39061 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC30.43■■■□□ 2.46
Col18a1P39061 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Col18a1P39061 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Col18a1P39061 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
Col18a1P39061 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Col18a1P39061 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
Col18a1P39061 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
Col18a1P39061 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Col18a1P39061 AC164433.2-201ENSMUST00000226346 1701 ntBASIC30.43■■■□□ 2.46
Col18a1P39061 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC30.42■■■□□ 2.46
Col18a1P39061 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Col18a1P39061 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Col18a1P39061 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC30.41■■■□□ 2.46
Col18a1P39061 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Col18a1P39061 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col18a1P39061 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
Col18a1P39061 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Col18a1P39061 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC30.39■■■□□ 2.46
Col18a1P39061 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC30.39■■■□□ 2.46
Col18a1P39061 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Col18a1P39061 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Col18a1P39061 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Col18a1P39061 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Col18a1P39061 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC30.38■■■□□ 2.45
Col18a1P39061 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC30.38■■■□□ 2.45
Col18a1P39061 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Col18a1P39061 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Col18a1P39061 Gm18284-201ENSMUST00000172604 624 ntBASIC30.36■■■□□ 2.45
Col18a1P39061 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Col18a1P39061 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Col18a1P39061 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Col18a1P39061 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
Col18a1P39061 Golgb1-201ENSMUST00000023534 498 ntBASIC30.34■■■□□ 2.45
Col18a1P39061 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.34■■■□□ 2.45
Col18a1P39061 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Col18a1P39061 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
Col18a1P39061 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
Col18a1P39061 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC30.33■■■□□ 2.45
Col18a1P39061 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Col18a1P39061 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Col18a1P39061 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Col18a1P39061 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Col18a1P39061 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Col18a1P39061 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Col18a1P39061 Nsd1-206ENSMUST00000224918 1001 ntBASIC30.32■■■□□ 2.44
Col18a1P39061 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms