Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Chmp6P0C0A3 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Chmp6P0C0A3 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC23.72■■□□□ 1.39
Chmp6P0C0A3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp6P0C0A3 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp6P0C0A3 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp6P0C0A3 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC23.71■■□□□ 1.39
Chmp6P0C0A3 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp6P0C0A3 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp6P0C0A3 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Chmp6P0C0A3 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Chmp6P0C0A3 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Chmp6P0C0A3 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC23.7■■□□□ 1.38
Chmp6P0C0A3 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.7■■□□□ 1.38
Chmp6P0C0A3 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Chmp6P0C0A3 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp6P0C0A3 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC23.68■■□□□ 1.38
Chmp6P0C0A3 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Chmp6P0C0A3 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp6P0C0A3 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC23.67■■□□□ 1.38
Chmp6P0C0A3 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp6P0C0A3 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp6P0C0A3 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chmp6P0C0A3 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC23.66■■□□□ 1.38
Chmp6P0C0A3 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Chmp6P0C0A3 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Chmp6P0C0A3 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp6P0C0A3 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
Chmp6P0C0A3 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp6P0C0A3 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Chmp6P0C0A3 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
Chmp6P0C0A3 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Gm7199-201ENSMUST00000118327 1485 ntBASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Chmp6P0C0A3 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Chmp6P0C0A3 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp6P0C0A3 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Chmp6P0C0A3 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Chmp6P0C0A3 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Chmp6P0C0A3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Chmp6P0C0A3 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.37
Chmp6P0C0A3 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC23.58■■□□□ 1.37
Chmp6P0C0A3 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Chmp6P0C0A3 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
Chmp6P0C0A3 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Chmp6P0C0A3 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC23.57■■□□□ 1.36
Chmp6P0C0A3 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chmp6P0C0A3 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
Chmp6P0C0A3 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chmp6P0C0A3 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Chmp6P0C0A3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC23.56■■□□□ 1.36
Chmp6P0C0A3 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chmp6P0C0A3 Gm10420-201ENSMUST00000121713 882 ntBASIC23.56■■□□□ 1.36
Chmp6P0C0A3 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
Chmp6P0C0A3 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Chmp6P0C0A3 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 95.7 ms