Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cd40lgP27548 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cd40lgP27548 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cd40lgP27548 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm15483-201ENSMUST00000120338 456 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm27920-201ENSMUST00000183953 96 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm27430-201ENSMUST00000184585 107 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm43474-201ENSMUST00000196415 774 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Gm44333-201ENSMUST00000197168 107 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.19□□□□□ -0.3
Cd40lgP27548 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Cd40lgP27548 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cd40lgP27548 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm2810-201ENSMUST00000118681 990 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm10253-201ENSMUST00000194270 940 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm7774-201ENSMUST00000200064 533 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm9182-201ENSMUST00000217829 639 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cd40lgP27548 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Cd40lgP27548 Gm37728-201ENSMUST00000195025 2292 ntBASIC13.18□□□□□ -0.3
Cd40lgP27548 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cd40lgP27548 Gm25925-201ENSMUST00000158314 306 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms