Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 MIR3615-201ENST00000581999 87 ntBASIC13.24□□□□□ -0.29
COL6A5A8TX70 AC016629.1-201ENST00000596579 586 ntBASIC13.24□□□□□ -0.29
COL6A5A8TX70 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 NUS1P3-201ENST00000423502 862 ntBASIC13.24□□□□□ -0.29
COL6A5A8TX70 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RPL37AP1-201ENST00000412502 279 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 FO681548.1-201ENST00000455617 1132 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RPSAP52-203ENST00000622976 1023 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 POLI-202ENST00000406285 2030 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 AC093525.8-201ENST00000624099 1342 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 RPL7P3-201ENST00000441388 714 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 CROCCP4-201ENST00000457096 498 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 MBP-227ENST00000526111 581 ntTSL 4 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 TPRX2P-201ENST00000535362 881 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 HNRNPUP1-201ENST00000554987 333 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.23□□□□□ -0.29
COL6A5A8TX70 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL6A5A8TX70 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
COL6A5A8TX70 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 PKD1P6-201ENST00000343738 4769 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AC092978.1-202ENST00000637590 1327 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 RPS2P36-201ENST00000456516 831 ntBASIC13.22□□□□□ -0.29
COL6A5A8TX70 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL6A5A8TX70 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL6A5A8TX70 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms