Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.09■□□□□ 0.33
LIMK1P53667 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LIMK1P53667 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMK1P53667 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.08■□□□□ 0.33
LIMK1P53667 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.08■□□□□ 0.33
LIMK1P53667 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMK1P53667 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIMK1P53667 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LIMK1P53667 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.08■□□□□ 0.33
LIMK1P53667 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
LIMK1P53667 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LIMK1P53667 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LIMK1P53667 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.08■□□□□ 0.33
LIMK1P53667 ANO7L1-203ENST00000602586 1720 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.08■□□□□ 0.32
LIMK1P53667 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.08■□□□□ 0.32
LIMK1P53667 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 AC003669.1-201ENST00000334569 611 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 ADH5P3-201ENST00000433842 1137 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMK1P53667 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMK1P53667 AC112191.1-201ENST00000523689 701 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 AC051619.7-201ENST00000568314 623 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMK1P53667 AL008721.1-201ENST00000609964 604 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 AL358472.5-202ENST00000641448 1267 ntBASIC17.08■□□□□ 0.32
LIMK1P53667 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LIMK1P53667 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.08■□□□□ 0.32
LIMK1P53667 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LIMK1P53667 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIMK1P53667 AC132938.5-201ENST00000624980 1813 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIMK1P53667 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 AC148477.5-201ENST00000625164 1645 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMK1P53667 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMK1P53667 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 KLF4P1-201ENST00000412782 1185 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.07■□□□□ 0.32
LIMK1P53667 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMK1P53667 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 AL512356.2-201ENST00000546955 174 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.07■□□□□ 0.32
LIMK1P53667 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 LINC00896-202ENST00000609602 2128 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMK1P53667 AC073592.3-201ENST00000625118 1834 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 FZD10-202ENST00000539839 3282 ntBASIC17.07■□□□□ 0.32
LIMK1P53667 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMK1P53667 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.07■□□□□ 0.32
LIMK1P53667 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIMK1P53667 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
LIMK1P53667 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LIMK1P53667 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.06■□□□□ 0.32
LIMK1P53667 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.06■□□□□ 0.32
LIMK1P53667 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
LIMK1P53667 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LIMK1P53667 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
LIMK1P53667 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
LIMK1P53667 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.06■□□□□ 0.32
LIMK1P53667 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LIMK1P53667 OR8S1-201ENST00000310194 1080 ntBASIC17.06■□□□□ 0.32
LIMK1P53667 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms