Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.8□□□□□ -0.04
Sox9Q04887 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Sox9Q04887 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC14.8□□□□□ -0.04
Sox9Q04887 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC14.8□□□□□ -0.04
Sox9Q04887 Gm4857-201ENSMUST00000192718 785 ntBASIC14.8□□□□□ -0.04
Sox9Q04887 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC14.8□□□□□ -0.04
Sox9Q04887 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Sox9Q04887 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.8□□□□□ -0.04
Sox9Q04887 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Sox9Q04887 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox9Q04887 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Gm27514-201ENSMUST00000183692 110 ntBASIC14.79□□□□□ -0.04
Sox9Q04887 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Sox9Q04887 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC14.79□□□□□ -0.04
Sox9Q04887 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.79□□□□□ -0.04
Sox9Q04887 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC14.79□□□□□ -0.04
Sox9Q04887 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.79□□□□□ -0.04
Sox9Q04887 AC154806.6-201ENSMUST00000228192 202 ntBASIC14.79□□□□□ -0.04
Sox9Q04887 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Sox9Q04887 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Sox9Q04887 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Sox9Q04887 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sox9Q04887 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Sox9Q04887 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
Sox9Q04887 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC14.78□□□□□ -0.04
Sox9Q04887 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC14.78□□□□□ -0.04
Sox9Q04887 Gm21470-201ENSMUST00000187680 696 ntBASIC14.78□□□□□ -0.04
Sox9Q04887 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC14.78□□□□□ -0.04
Sox9Q04887 Gm5425-201ENSMUST00000214125 459 ntBASIC14.78□□□□□ -0.04
Sox9Q04887 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC14.78□□□□□ -0.04
Sox9Q04887 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Sox9Q04887 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Sox9Q04887 Zkscan3-208ENSMUST00000224820 5398 ntBASIC14.77□□□□□ -0.04
Sox9Q04887 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.77□□□□□ -0.04
Sox9Q04887 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Sox9Q04887 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Sox9Q04887 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Gm13350-201ENSMUST00000120519 479 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Gm4804-201ENSMUST00000182234 999 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Gm6283-201ENSMUST00000182369 1000 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Gm45880-201ENSMUST00000213041 853 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Sox9Q04887 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 AC121598.1-201ENSMUST00000228224 1019 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.77□□□□□ -0.05
Sox9Q04887 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Sox9Q04887 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms