Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VMP1Q96GC9 NSUN5P1-202ENST00000421140 1535 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 NSUN5P2-203ENST00000457352 1529 ntBASIC16.7■□□□□ 0.26
VMP1Q96GC9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.7■□□□□ 0.26
VMP1Q96GC9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 AP005901.3-202ENST00000581653 237 ntBASIC16.69■□□□□ 0.26
VMP1Q96GC9 AC012313.10-201ENST00000623509 926 ntBASIC16.69■□□□□ 0.26
VMP1Q96GC9 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.69■□□□□ 0.26
VMP1Q96GC9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VMP1Q96GC9 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 AP001094.4-201ENST00000579008 2176 ntBASIC16.68■□□□□ 0.26
VMP1Q96GC9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.68■□□□□ 0.26
VMP1Q96GC9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 AC091607.1-201ENST00000490318 1060 ntBASIC16.68■□□□□ 0.26
VMP1Q96GC9 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 KRT126P-201ENST00000549467 1181 ntBASIC16.68■□□□□ 0.26
VMP1Q96GC9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 AC099336.1-202ENST00000602961 463 ntBASIC16.68■□□□□ 0.26
VMP1Q96GC9 AL121772.3-201ENST00000610840 674 ntBASIC16.68■□□□□ 0.26
VMP1Q96GC9 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VMP1Q96GC9 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC16.68■□□□□ 0.26
VMP1Q96GC9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VMP1Q96GC9 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.67■□□□□ 0.26
VMP1Q96GC9 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms