Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Gm12620-201ENSMUST00000119791 1986 ntBASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Gm12612-201ENSMUST00000140182 1986 ntBASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Gm5867-201ENSMUST00000063197 592 ntBASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.47■□□□□ 0.07
Upf3bQ3ULL6 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Gm42466-201ENSMUST00000202099 1301 ntBASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Gm43697-201ENSMUST00000199637 2581 ntBASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Gm14042-201ENSMUST00000120139 833 ntBASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Gm5312-201ENSMUST00000203728 547 ntBASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Gm8396-201ENSMUST00000057361 823 ntBASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Upf3bQ3ULL6 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
Upf3bQ3ULL6 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm22065-201ENSMUST00000103753 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm22066-201ENSMUST00000103761 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24932-201ENSMUST00000103763 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24115-201ENSMUST00000103799 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm22190-201ENSMUST00000103827 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm22191-201ENSMUST00000103831 110 ntBASIC15.45■□□□□ 0.06
Upf3bQ3ULL6 Gm24721-201ENSMUST00000103849 110 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms