Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm15678-201ENSMUST00000117573 960 ntBASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm33320-201ENSMUST00000192232 530 ntBASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Gm5356-201ENSMUST00000093326 615 ntBASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Nkx6-1Q99MA9 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 AA619741-201ENSMUST00000195095 646 ntBASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gm45331-201ENSMUST00000209868 554 ntBASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gm9182-201ENSMUST00000217829 639 ntBASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 AC155729.1-201ENSMUST00000227758 544 ntBASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Nkx6-1Q99MA9 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 AC166574.6-201ENSMUST00000227889 1806 ntBASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Nkx6-1Q99MA9 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms