Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Scaf4Q6PFF0 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Tcf21-202ENSMUST00000218002 1788 ntBASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Gm25990-201ENSMUST00000102440 86 ntBASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Scaf4Q6PFF0 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Mir7071-201ENSMUST00000184847 69 ntBASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Gm17807-201ENSMUST00000186869 298 ntBASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Scaf4Q6PFF0 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Scaf4Q6PFF0 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
Scaf4Q6PFF0 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Scaf4Q6PFF0 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Scaf4Q6PFF0 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Scaf4Q6PFF0 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scaf4Q6PFF0 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Scaf4Q6PFF0 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms