Protein–RNA interactions for Protein: Q9CQV4

Retreg3, Reticulophagy regulator 3, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Retreg3Q9CQV4 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC22.31■■□□□ 1.16
Retreg3Q9CQV4 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retreg3Q9CQV4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retreg3Q9CQV4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Retreg3Q9CQV4 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retreg3Q9CQV4 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retreg3Q9CQV4 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Retreg3Q9CQV4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC22.27■■□□□ 1.16
Retreg3Q9CQV4 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retreg3Q9CQV4 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retreg3Q9CQV4 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retreg3Q9CQV4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retreg3Q9CQV4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC22.26■■□□□ 1.15
Retreg3Q9CQV4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC22.26■■□□□ 1.15
Retreg3Q9CQV4 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retreg3Q9CQV4 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Retreg3Q9CQV4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Retreg3Q9CQV4 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Retreg3Q9CQV4 Gm7332-201ENSMUST00000118351 454 ntBASIC22.22■■□□□ 1.15
Retreg3Q9CQV4 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Retreg3Q9CQV4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retreg3Q9CQV4 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retreg3Q9CQV4 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retreg3Q9CQV4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC22.21■■□□□ 1.15
Retreg3Q9CQV4 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retreg3Q9CQV4 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retreg3Q9CQV4 Gm14523-201ENSMUST00000117260 558 ntBASIC22.2■■□□□ 1.14
Retreg3Q9CQV4 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retreg3Q9CQV4 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
Retreg3Q9CQV4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Retreg3Q9CQV4 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Retreg3Q9CQV4 AC153524.1-201ENSMUST00000220436 1935 ntBASIC22.18■■□□□ 1.14
Retreg3Q9CQV4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Retreg3Q9CQV4 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Retreg3Q9CQV4 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC22.18■■□□□ 1.14
Retreg3Q9CQV4 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retreg3Q9CQV4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC22.17■■□□□ 1.14
Retreg3Q9CQV4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC22.17■■□□□ 1.14
Retreg3Q9CQV4 AC117769.4-201ENSMUST00000225679 685 ntBASIC22.17■■□□□ 1.14
Retreg3Q9CQV4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC22.17■■□□□ 1.14
Retreg3Q9CQV4 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retreg3Q9CQV4 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
Retreg3Q9CQV4 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
Retreg3Q9CQV4 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
Retreg3Q9CQV4 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retreg3Q9CQV4 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retreg3Q9CQV4 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Gm28731-201ENSMUST00000185564 1569 ntBASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retreg3Q9CQV4 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Retreg3Q9CQV4 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
Retreg3Q9CQV4 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retreg3Q9CQV4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retreg3Q9CQV4 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Retreg3Q9CQV4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Retreg3Q9CQV4 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC22.13■■□□□ 1.13
Retreg3Q9CQV4 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 87.8 ms