Protein–RNA interactions for Protein: Q9CQV4

Retreg3, Reticulophagy regulator 3, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Retreg3Q9CQV4 Gm25239-201ENSMUST00000174915 86 ntBASIC37.39■■■■□ 3.58
Retreg3Q9CQV4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.11
Retreg3Q9CQV4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
Retreg3Q9CQV4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.99■■■■□ 3.03
Retreg3Q9CQV4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Retreg3Q9CQV4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.31■■■□□ 2.92
Retreg3Q9CQV4 Gm15042-201ENSMUST00000120212 883 ntBASIC33.04■■■□□ 2.88
Retreg3Q9CQV4 Gm15045-201ENSMUST00000117359 883 ntBASIC32.46■■■□□ 2.79
Retreg3Q9CQV4 Gm24109-201ENSMUST00000175489 103 ntBASIC32.27■■■□□ 2.76
Retreg3Q9CQV4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Retreg3Q9CQV4 Psd-208ENSMUST00000224556 2034 ntBASIC32.03■■■□□ 2.72
Retreg3Q9CQV4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Retreg3Q9CQV4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.61■■■□□ 2.65
Retreg3Q9CQV4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
Retreg3Q9CQV4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
Retreg3Q9CQV4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
Retreg3Q9CQV4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Retreg3Q9CQV4 Gm23366-201ENSMUST00000175022 89 ntBASIC31.22■■■□□ 2.59
Retreg3Q9CQV4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
Retreg3Q9CQV4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Retreg3Q9CQV4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Retreg3Q9CQV4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
Retreg3Q9CQV4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Retreg3Q9CQV4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
Retreg3Q9CQV4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Retreg3Q9CQV4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Retreg3Q9CQV4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Retreg3Q9CQV4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.81■■■□□ 2.52
Retreg3Q9CQV4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Retreg3Q9CQV4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Retreg3Q9CQV4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Retreg3Q9CQV4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
Retreg3Q9CQV4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.39■■■□□ 2.46
Retreg3Q9CQV4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.36■■■□□ 2.45
Retreg3Q9CQV4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
Retreg3Q9CQV4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Retreg3Q9CQV4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Retreg3Q9CQV4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Retreg3Q9CQV4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Retreg3Q9CQV4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.93■■■□□ 2.38
Retreg3Q9CQV4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Retreg3Q9CQV4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.84■■■□□ 2.37
Retreg3Q9CQV4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Retreg3Q9CQV4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.79■■■□□ 2.36
Retreg3Q9CQV4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Retreg3Q9CQV4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Retreg3Q9CQV4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.65■■■□□ 2.34
Retreg3Q9CQV4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Retreg3Q9CQV4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Retreg3Q9CQV4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.51■■■□□ 2.31
Retreg3Q9CQV4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Retreg3Q9CQV4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Retreg3Q9CQV4 Gm25238-201ENSMUST00000174914 89 ntBASIC29.42■■■□□ 2.3
Retreg3Q9CQV4 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.42■■■□□ 2.3
Retreg3Q9CQV4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Retreg3Q9CQV4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Retreg3Q9CQV4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Retreg3Q9CQV4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Retreg3Q9CQV4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Retreg3Q9CQV4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
Retreg3Q9CQV4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Retreg3Q9CQV4 Gm27325-201ENSMUST00000175467 74 ntBASIC29.06■■■□□ 2.24
Retreg3Q9CQV4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
Retreg3Q9CQV4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.99■■■□□ 2.23
Retreg3Q9CQV4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
Retreg3Q9CQV4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Retreg3Q9CQV4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.93■■■□□ 2.22
Retreg3Q9CQV4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.92■■■□□ 2.22
Retreg3Q9CQV4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28.91■■■□□ 2.22
Retreg3Q9CQV4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.89■■■□□ 2.22
Retreg3Q9CQV4 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.89■■■□□ 2.22
Retreg3Q9CQV4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.88■■■□□ 2.21
Retreg3Q9CQV4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Retreg3Q9CQV4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Retreg3Q9CQV4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Retreg3Q9CQV4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Retreg3Q9CQV4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Retreg3Q9CQV4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
Retreg3Q9CQV4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Retreg3Q9CQV4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC28.59■■■□□ 2.17
Retreg3Q9CQV4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.53■■■□□ 2.16
Retreg3Q9CQV4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Retreg3Q9CQV4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.48■■■□□ 2.15
Retreg3Q9CQV4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Retreg3Q9CQV4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.41■■■□□ 2.14
Retreg3Q9CQV4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Retreg3Q9CQV4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Retreg3Q9CQV4 Gm25262-201ENSMUST00000174934 133 ntBASIC28.37■■■□□ 2.13
Retreg3Q9CQV4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
Retreg3Q9CQV4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Retreg3Q9CQV4 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Retreg3Q9CQV4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Retreg3Q9CQV4 Rab21-202ENSMUST00000218831 843 ntBASIC28.22■■■□□ 2.11
Retreg3Q9CQV4 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Retreg3Q9CQV4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Retreg3Q9CQV4 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Retreg3Q9CQV4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.12■■■□□ 2.09
Retreg3Q9CQV4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Retreg3Q9CQV4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Retreg3Q9CQV4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Retrieved 100 of 76,532 protein–RNA pairs in 9.2 ms