Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Vps53Q8CCB4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
Vps53Q8CCB4 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC25.57■■□□□ 1.68
Vps53Q8CCB4 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Vps53Q8CCB4 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Vps53Q8CCB4 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC25.56■■□□□ 1.68
Vps53Q8CCB4 Gm10420-201ENSMUST00000121713 882 ntBASIC25.56■■□□□ 1.68
Vps53Q8CCB4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC25.56■■□□□ 1.68
Vps53Q8CCB4 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
Vps53Q8CCB4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Vps53Q8CCB4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC25.55■■□□□ 1.68
Vps53Q8CCB4 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Vps53Q8CCB4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Vps53Q8CCB4 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Vps53Q8CCB4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC25.54■■□□□ 1.68
Vps53Q8CCB4 AC151971.4-201ENSMUST00000214717 704 ntBASIC25.54■■□□□ 1.68
Vps53Q8CCB4 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Vps53Q8CCB4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Vps53Q8CCB4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
Vps53Q8CCB4 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC25.53■■□□□ 1.68
Vps53Q8CCB4 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Gm5812-201ENSMUST00000061073 957 ntBASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Vps53Q8CCB4 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Vps53Q8CCB4 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Vps53Q8CCB4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
Vps53Q8CCB4 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Vps53Q8CCB4 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
Vps53Q8CCB4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Vps53Q8CCB4 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Vps53Q8CCB4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Vps53Q8CCB4 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Vps53Q8CCB4 Gm5921-201ENSMUST00000075898 882 ntBASIC25.5■■□□□ 1.67
Vps53Q8CCB4 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Vps53Q8CCB4 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Vps53Q8CCB4 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Vps53Q8CCB4 AC153911.1-201ENSMUST00000220378 758 ntBASIC25.49■■□□□ 1.67
Vps53Q8CCB4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Vps53Q8CCB4 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
Vps53Q8CCB4 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Vps53Q8CCB4 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
Vps53Q8CCB4 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Vps53Q8CCB4 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
Vps53Q8CCB4 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Vps53Q8CCB4 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC25.47■■□□□ 1.67
Vps53Q8CCB4 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
Vps53Q8CCB4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Vps53Q8CCB4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Vps53Q8CCB4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Vps53Q8CCB4 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC25.45■■□□□ 1.66
Vps53Q8CCB4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Vps53Q8CCB4 Terc-201ENSMUST00000082862 423 ntBASIC25.45■■□□□ 1.66
Vps53Q8CCB4 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Vps53Q8CCB4 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
Vps53Q8CCB4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Vps53Q8CCB4 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC25.44■■□□□ 1.66
Vps53Q8CCB4 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC25.44■■□□□ 1.66
Vps53Q8CCB4 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Vps53Q8CCB4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC25.44■■□□□ 1.66
Vps53Q8CCB4 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Vps53Q8CCB4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Vps53Q8CCB4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Vps53Q8CCB4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Vps53Q8CCB4 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Vps53Q8CCB4 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Vps53Q8CCB4 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC25.41■■□□□ 1.66
Vps53Q8CCB4 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Vps53Q8CCB4 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Vps53Q8CCB4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Vps53Q8CCB4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
Vps53Q8CCB4 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.65
Vps53Q8CCB4 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
Vps53Q8CCB4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC25.38■■□□□ 1.65
Vps53Q8CCB4 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
Vps53Q8CCB4 Gm22567-201ENSMUST00000175542 342 ntBASIC25.38■■□□□ 1.65
Vps53Q8CCB4 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Vps53Q8CCB4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.37■■□□□ 1.65
Vps53Q8CCB4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC25.37■■□□□ 1.65
Vps53Q8CCB4 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC25.37■■□□□ 1.65
Vps53Q8CCB4 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Vps53Q8CCB4 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms