Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.18■□□□□ 0.66
Nkx3-1P97436 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Nkx3-1P97436 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx3-1P97436 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx3-1P97436 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Nkx3-1P97436 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx3-1P97436 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx3-1P97436 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Nkx3-1P97436 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx3-1P97436 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Nkx3-1P97436 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx3-1P97436 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.16■□□□□ 0.66
Nkx3-1P97436 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.16■□□□□ 0.66
Nkx3-1P97436 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Nkx3-1P97436 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Nkx3-1P97436 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Nkx3-1P97436 Gm15039-201ENSMUST00000118914 875 ntBASIC19.14■□□□□ 0.65
Nkx3-1P97436 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx3-1P97436 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx3-1P97436 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx3-1P97436 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Nkx3-1P97436 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx3-1P97436 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Nkx3-1P97436 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx3-1P97436 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx3-1P97436 Gm45102-201ENSMUST00000207427 857 ntBASIC19.13■□□□□ 0.65
Nkx3-1P97436 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx3-1P97436 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx3-1P97436 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Nkx3-1P97436 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx3-1P97436 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx3-1P97436 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.12■□□□□ 0.65
Nkx3-1P97436 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.12■□□□□ 0.65
Nkx3-1P97436 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx3-1P97436 Gm14117-201ENSMUST00000122417 843 ntBASIC19.12■□□□□ 0.65
Nkx3-1P97436 Gm18755-201ENSMUST00000218030 1099 ntBASIC19.12■□□□□ 0.65
Nkx3-1P97436 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Nkx3-1P97436 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Nkx3-1P97436 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx3-1P97436 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx3-1P97436 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx3-1P97436 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.1■□□□□ 0.65
Nkx3-1P97436 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Nkx3-1P97436 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Nkx3-1P97436 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Nkx3-1P97436 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Nkx3-1P97436 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Gm9959-201ENSMUST00000068277 390 ntBASIC19.08■□□□□ 0.64
Nkx3-1P97436 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Nkx3-1P97436 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nkx3-1P97436 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.07■□□□□ 0.64
Nkx3-1P97436 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Nkx3-1P97436 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nkx3-1P97436 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Nkx3-1P97436 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.06■□□□□ 0.64
Nkx3-1P97436 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.06■□□□□ 0.64
Nkx3-1P97436 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx3-1P97436 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Nkx3-1P97436 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx3-1P97436 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx3-1P97436 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Nkx3-1P97436 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx3-1P97436 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Nkx3-1P97436 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.04■□□□□ 0.64
Nkx3-1P97436 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.04■□□□□ 0.64
Nkx3-1P97436 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Nkx3-1P97436 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx3-1P97436 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.04■□□□□ 0.64
Nkx3-1P97436 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx3-1P97436 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx3-1P97436 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Nkx3-1P97436 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Nkx3-1P97436 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms