Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 MIR658-201ENST00000385210 100 ntBASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 MIR4525-201ENST00000580000 75 ntBASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 AC022144.1-201ENST00000602255 1580 ntBASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMC1BQ8NDV3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 LINC01225-203ENST00000563550 1244 ntBASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.62■□□□□ 0.89
SMC1BQ8NDV3 AC100757.3-201ENST00000622361 1406 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AC079776.1-201ENST00000401540 1152 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AC004945.1-201ENST00000416738 983 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 FAM8A2P-201ENST00000528813 1142 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AL590560.3-201ENST00000623350 461 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AC084121.4-201ENST00000641598 221 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AL645728.2-201ENST00000641974 660 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AF228730.8-201ENST00000642140 221 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 AC112907.3-201ENST00000577781 2400 ntBASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMC1BQ8NDV3 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 AC027369.6-201ENST00000525520 931 ntBASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 STK25P1-201ENST00000585406 838 ntBASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMC1BQ8NDV3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms