Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Snrnp40Q6PE01 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Gm44443-201ENSMUST00000204396 5633 ntBASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Gm15678-201ENSMUST00000117573 960 ntBASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Snrnp40Q6PE01 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Gm21009-201ENSMUST00000197169 1669 ntBASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Prob1-201ENSMUST00000097619 3021 ntBASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Snrnp40Q6PE01 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Gm20628-201ENSMUST00000177363 3215 ntBASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Snrnp40Q6PE01 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms