Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Gm9182-201ENSMUST00000217829 639 ntBASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Rbfox2-208ENSMUST00000227930 1218 ntBASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim47Q8C0E3 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Gm28630-201ENSMUST00000187806 498 ntBASIC16.16■□□□□ 0.18
Trim47Q8C0E3 AC159114.1-201ENSMUST00000220349 266 ntBASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim47Q8C0E3 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim47Q8C0E3 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trim47Q8C0E3 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC16.14■□□□□ 0.18
Trim47Q8C0E3 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Gm13223-201ENSMUST00000118609 747 ntBASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC16.14■□□□□ 0.17
Trim47Q8C0E3 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms