Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Vps28Q9D1C8 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15□□□□□ -0.01
Vps28Q9D1C8 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Vps28Q9D1C8 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps28Q9D1C8 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Gm27920-201ENSMUST00000183953 96 ntBASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 CT025626.1-201ENSMUST00000223735 1455 ntBASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Vps28Q9D1C8 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Gm38058-201ENSMUST00000194323 4368 ntBASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Klk2-ps-201ENSMUST00000205342 571 ntBASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Gm37305-201ENSMUST00000195714 4279 ntBASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps28Q9D1C8 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps28Q9D1C8 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps28Q9D1C8 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms