Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Rprl2-201ENSMUST00000157150 290 ntBASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Gm20553-201ENSMUST00000204205 844 ntBASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Thap2-203ENSMUST00000218989 527 ntBASIC16.39■□□□□ 0.21
Ushbp1Q8R370 AC140397.2-201ENSMUST00000224213 834 ntBASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ushbp1Q8R370 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 AC162938.1-201ENSMUST00000213140 2323 ntBASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Gm8749-201ENSMUST00000117737 331 ntBASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Gm5628-201ENSMUST00000222318 1049 ntBASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ushbp1Q8R370 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Gm9856-201ENSMUST00000217077 2578 ntBASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Gm43125-201ENSMUST00000201724 730 ntBASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ushbp1Q8R370 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ushbp1Q8R370 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms