Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 KRT18P32-201ENST00000424695 1287 ntBASIC23.16■■□□□ 1.3
USP54Q70EL1 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AC011467.4-201ENST00000594891 528 ntBASIC23.16■■□□□ 1.3
USP54Q70EL1 AC106028.4-201ENST00000614509 607 ntBASIC23.16■■□□□ 1.3
USP54Q70EL1 AL645728.2-201ENST00000641974 660 ntBASIC23.16■■□□□ 1.3
USP54Q70EL1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
USP54Q70EL1 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC23.16■■□□□ 1.3
USP54Q70EL1 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
USP54Q70EL1 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC23.16■■□□□ 1.3
USP54Q70EL1 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC23.16■■□□□ 1.3
USP54Q70EL1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC23.15■■□□□ 1.3
USP54Q70EL1 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 RN7SL589P-201ENST00000481268 310 ntBASIC23.15■■□□□ 1.3
USP54Q70EL1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC23.15■■□□□ 1.3
USP54Q70EL1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
USP54Q70EL1 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC23.15■■□□□ 1.3
USP54Q70EL1 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 AC004835.2-201ENST00000603762 682 ntBASIC23.15■■□□□ 1.3
USP54Q70EL1 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC23.15■■□□□ 1.3
USP54Q70EL1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.15■■□□□ 1.3
USP54Q70EL1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
USP54Q70EL1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.3
USP54Q70EL1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
USP54Q70EL1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
USP54Q70EL1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
USP54Q70EL1 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC23.14■■□□□ 1.3
USP54Q70EL1 CALY-203ENST00000368558 825 ntTSL 5 BASIC23.14■■□□□ 1.29
USP54Q70EL1 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP54Q70EL1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
USP54Q70EL1 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
USP54Q70EL1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC23.14■■□□□ 1.29
USP54Q70EL1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC23.14■■□□□ 1.29
USP54Q70EL1 AL354751.1-201ENST00000412768 1863 ntBASIC23.14■■□□□ 1.29
USP54Q70EL1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP54Q70EL1 AC009113.1-201ENST00000570267 2443 ntBASIC23.14■■□□□ 1.29
USP54Q70EL1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
USP54Q70EL1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC23.14■■□□□ 1.29
USP54Q70EL1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
USP54Q70EL1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
USP54Q70EL1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
USP54Q70EL1 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP54Q70EL1 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC23.13■■□□□ 1.29
USP54Q70EL1 SPDYE11-202ENST00000450699 704 ntBASIC23.13■■□□□ 1.29
USP54Q70EL1 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC23.13■■□□□ 1.29
USP54Q70EL1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC23.13■■□□□ 1.29
USP54Q70EL1 SPDYE9P-201ENST00000570642 692 ntBASIC23.13■■□□□ 1.29
USP54Q70EL1 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP54Q70EL1 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP54Q70EL1 SPDYE10P-202ENST00000612005 668 ntBASIC23.13■■□□□ 1.29
USP54Q70EL1 SPDYE8P-202ENST00000612377 668 ntBASIC23.13■■□□□ 1.29
USP54Q70EL1 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC23.13■■□□□ 1.29
USP54Q70EL1 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
USP54Q70EL1 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC23.13■■□□□ 1.29
USP54Q70EL1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC23.13■■□□□ 1.29
USP54Q70EL1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
USP54Q70EL1 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP54Q70EL1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP54Q70EL1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
USP54Q70EL1 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
USP54Q70EL1 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms