Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Efs-202ENSMUST00000227037 2540 ntBASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Gm20949-201ENSMUST00000206478 952 ntBASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps53Q8CCB4 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Gm11745-201ENSMUST00000121669 448 ntBASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Thap2-203ENSMUST00000218989 527 ntBASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 AC140397.2-201ENSMUST00000224213 834 ntBASIC17.04■□□□□ 0.32
Vps53Q8CCB4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps53Q8CCB4 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.03■□□□□ 0.32
Vps53Q8CCB4 AC119177.1-201ENSMUST00000227647 1332 ntBASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Rprl2-201ENSMUST00000157150 290 ntBASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Mir6990-201ENSMUST00000183724 91 ntBASIC17.03■□□□□ 0.32
Vps53Q8CCB4 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps53Q8CCB4 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms