Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL121761.2-201ENST00000598007 1648 ntBASIC17.31■□□□□ 0.36
PKNOX1P55347 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PKNOX1P55347 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.31■□□□□ 0.36
PKNOX1P55347 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.31■□□□□ 0.36
PKNOX1P55347 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
PKNOX1P55347 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
PKNOX1P55347 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.3■□□□□ 0.36
PKNOX1P55347 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 KRT8P47-201ENST00000604727 1398 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 AL139384.1-201ENST00000612143 3047 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.3■□□□□ 0.36
PKNOX1P55347 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.3■□□□□ 0.36
PKNOX1P55347 AC087499.1-201ENST00000418141 1075 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 LIN28AP1-201ENST00000429574 405 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.3■□□□□ 0.36
PKNOX1P55347 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 AC009154.2-201ENST00000621177 724 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 AC079602.3-201ENST00000623931 403 ntBASIC17.3■□□□□ 0.36
PKNOX1P55347 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
PKNOX1P55347 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PKNOX1P55347 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.3■□□□□ 0.36
PKNOX1P55347 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.3■□□□□ 0.36
PKNOX1P55347 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PKNOX1P55347 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.29■□□□□ 0.36
PKNOX1P55347 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.29■□□□□ 0.36
PKNOX1P55347 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.29■□□□□ 0.36
PKNOX1P55347 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.29■□□□□ 0.36
PKNOX1P55347 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.29■□□□□ 0.36
PKNOX1P55347 KRT18P48-201ENST00000434763 852 ntBASIC17.29■□□□□ 0.36
PKNOX1P55347 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 COX11P1-201ENST00000489116 835 ntBASIC17.29■□□□□ 0.36
PKNOX1P55347 AC093827.2-201ENST00000512654 315 ntBASIC17.29■□□□□ 0.36
PKNOX1P55347 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.29■□□□□ 0.36
PKNOX1P55347 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
PKNOX1P55347 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
PKNOX1P55347 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 REXO1L11P-201ENST00000620964 1927 ntBASIC17.29■□□□□ 0.36
PKNOX1P55347 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PKNOX1P55347 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
PKNOX1P55347 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.28■□□□□ 0.36
PKNOX1P55347 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PKNOX1P55347 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.28■□□□□ 0.36
PKNOX1P55347 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms