Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.95■■□□□ 1.1
COL5A3P25940 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.95■■□□□ 1.1
COL5A3P25940 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A3P25940 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.95■■□□□ 1.1
COL5A3P25940 TFAMP1-201ENST00000412727 736 ntBASIC21.95■■□□□ 1.1
COL5A3P25940 CNN2P2-201ENST00000443536 909 ntBASIC21.95■■□□□ 1.1
COL5A3P25940 CNN2P3-201ENST00000450201 906 ntBASIC21.95■■□□□ 1.1
COL5A3P25940 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.95■■□□□ 1.1
COL5A3P25940 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.95■■□□□ 1.1
COL5A3P25940 DUX4L27-201ENST00000554796 1261 ntBASIC21.95■■□□□ 1.1
COL5A3P25940 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.95■■□□□ 1.1
COL5A3P25940 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A3P25940 AL136317.3-201ENST00000618497 906 ntBASIC21.95■■□□□ 1.1
COL5A3P25940 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.95■■□□□ 1.1
COL5A3P25940 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A3P25940 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A3P25940 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A3P25940 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.95■■□□□ 1.1
COL5A3P25940 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC21.95■■□□□ 1.1
COL5A3P25940 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
COL5A3P25940 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.95■■□□□ 1.1
COL5A3P25940 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A3P25940 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A3P25940 WRB-204ENST00000398753 699 ntTSL 3 BASIC21.94■■□□□ 1.1
COL5A3P25940 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.94■■□□□ 1.1
COL5A3P25940 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.94■■□□□ 1.1
COL5A3P25940 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.94■■□□□ 1.1
COL5A3P25940 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A3P25940 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.94■■□□□ 1.1
COL5A3P25940 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.94■■□□□ 1.1
COL5A3P25940 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC21.94■■□□□ 1.1
COL5A3P25940 KRT18P55-202ENST00000578578 1546 ntBASIC21.94■■□□□ 1.1
COL5A3P25940 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.94■■□□□ 1.1
COL5A3P25940 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.94■■□□□ 1.1
COL5A3P25940 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A3P25940 REXO1L9P-201ENST00000604264 2108 ntBASIC21.94■■□□□ 1.1
COL5A3P25940 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
COL5A3P25940 AC236430.1-201ENST00000402231 743 ntBASIC21.94■■□□□ 1.1
COL5A3P25940 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.94■■□□□ 1.1
COL5A3P25940 UGT1A2P-201ENST00000454886 866 ntBASIC21.94■■□□□ 1.1
COL5A3P25940 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.94■■□□□ 1.1
COL5A3P25940 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A3P25940 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.94■■□□□ 1.1
COL5A3P25940 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A3P25940 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.94■■□□□ 1.1
COL5A3P25940 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
COL5A3P25940 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.94■■□□□ 1.1
COL5A3P25940 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.93■■□□□ 1.1
COL5A3P25940 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.93■■□□□ 1.1
COL5A3P25940 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
COL5A3P25940 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 TSFM-210ENST00000550559 897 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 AC243562.1-201ENST00000560672 389 ntBASIC21.93■■□□□ 1.1
COL5A3P25940 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.93■■□□□ 1.1
COL5A3P25940 MIR4745-201ENST00000577608 62 ntBASIC21.93■■□□□ 1.1
COL5A3P25940 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.93■■□□□ 1.1
COL5A3P25940 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 AKAP8P1-201ENST00000434743 1349 ntBASIC21.93■■□□□ 1.1
COL5A3P25940 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
COL5A3P25940 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.93■■□□□ 1.1
COL5A3P25940 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A3P25940 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.92■■□□□ 1.1
COL5A3P25940 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.92■■□□□ 1.1
COL5A3P25940 KLF2P3-201ENST00000451977 1087 ntBASIC21.92■■□□□ 1.1
COL5A3P25940 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A3P25940 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.92■■□□□ 1.1
COL5A3P25940 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.92■■□□□ 1.1
COL5A3P25940 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 AL645728.2-201ENST00000641974 660 ntBASIC21.92■■□□□ 1.1
COL5A3P25940 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
COL5A3P25940 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A3P25940 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.92■■□□□ 1.1
COL5A3P25940 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.92■■□□□ 1.1
COL5A3P25940 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 SPDYE14P-201ENST00000442619 822 ntBASIC21.92■■□□□ 1.1
COL5A3P25940 AC002472.2-201ENST00000442739 958 ntBASIC21.92■■□□□ 1.1
COL5A3P25940 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A3P25940 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms